) based on the the Mann-Whitney test
Two files are necessary to run the analysis: 1) a gene profile, and 2) a collection of gene-sets.
The gene-profile is a .txt file with a list of gene-symbols tab delimited with the corresponding intensity numeric value (eg. gene expression level; see this file
, for example).
The collection of gene-sets can be provided in .gmt format
(Gene Matrix Transposed file format),
from Ma'ayan Laboratory, for example.
Others gene-sets collections in .gmt format can be obtained from Molecular Signatures Database
Two file examples are provided here to tun the analysis: the gene profile
and the collection of the gene-sets
Once the files has been uploaded the analysis can be started with the RUN button. Parameters, such as the alternative hypothesis and p-value and $logit2NES$ thresholds, can be set in the relative boxes. After few seconds results are shown below and can be retrieved also in
.csv, .tsv, or .html file formats.
A TITLE box allows you to integrate a caption in the displayed table, and in the .html file.